Scaffold Ga0075430_100035743

Overview

Basic Information

• Taxon OID: 3300006846
• Scaffold ID: Ga0075430_100035743
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4214
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030801	Metagenome / Metatranscriptome	184	Y
F047168	Metagenome / Metatranscriptome	150	N
F081531	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075430_1000357431	F030801	AGGCGG	MPDISAATCNAVCEKTAEIQRLADQLEDILSQAGLGQRRGSHKDSRCEDIKNICQDIADEVTP
Ga0075430_1000357433	F081531	GAGG	MERISLPLEEFVGKLNEELANHPECLPGMRVIMQRPELKYSYEICDPTRDPTKPGSLQERMRADRVFKEVIAKVNEQYALMRP*
Ga0075430_1000357435	F047168	AGGAGG	MAIGDGMLAQVLLDYFQQHAEEFEQFVLERAGIGEGYVRWRGEEPQKRLVLKVTTLGSGLSVVSEREYALKMETISS*