Scaffold Ga0075421_100116318

Overview

Basic Information

• Taxon OID: 3300006845
• Scaffold ID: Ga0075421_100116318
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3359
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008503	Metagenome	332	Y
F046621	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075421_1001163182	F008503	GAGG	MKETLIVVVLAIALVGWLFLWFRNEGAVATSAAQPWPGGMGSLNAAGNRWPSLKANDASVKLTELAEALPKNEVVDDFVEREIARGELTIGDPPALLDVSAIRELLLREPIVWERRVEFDDTIVAEMRGLQMRVAKALVASALTKARGHDQTAWEDLHAAWKLARSLEEHPQMMAQTAVLTMARMINAVAWKMPLPAPAWLGELQERDNVQPLLEAFQYQAASYSRKPWFPTKWLADSVDRDRGIAEALFKETGCDVNTPMNDLGTDLSSVWRRAFRARAEREATANALRVREGKSIETISRCSDGGWMFDGTTLRFSREIATAAPDRPMPLVLQVKP*
Ga0075421_1001163183	F046621	GGAG	MLSSMMRLFVSGVIVVLVSGASLSRADAAVFRYRASFNAASQNLNTIDFESGANVPDGLGFLEIDGVFFRNANGVPRIIAGQNGNKLLLAPTVAEFTRLTIFLPPGTTAVGCEQFNKPMIVSISSGESVTMDQSDTSTFVGFISDQPIQSLIIAFDFPEPTPDVLMDNLSFGQRRAGNEPPVPELLVTGTGRVVALDSVTTTSEPFRVLASQLLSTDGRTRITLFVVGALLEPADLPFVTVQAEDTQQRLFDLPGEATARVKNLSWMSQVTVRLPDTLVGAGDLNVRVRVRGKESNKAPVRIE*