Scaffold Ga0075421_100090559

Overview

Basic Information

• Taxon OID: 3300006845
• Scaffold ID: Ga0075421_100090559
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3853
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005151	Metagenome / Metatranscriptome	410	Y
F034885	Metagenome	173	Y
F057260	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075421_1000905596	F005151	GAG	MDQESLRLLIQRKIRDGRLPHDGIKKVWSSPSAGETCNACDTILAMDQLLMEGITLDLGRRPLQMHVRCFQIWDHERRAA*
Ga0075421_1000905597	F034885	N/A	MDAEAIRDLIRQKLHDGRLPRGSAPRAFGRPGNWQRCEACDGTMPKALLMVEVYPPTNDKKSVRFHGDCYTLWNDERRGLKS*
Ga0075421_1000905599	F057260	GGAGG	MLSRREIARFAASVLAIAAVAGCATQRSAVAPVAMEMSTSLDTASITGVWEGQVWEMPVHYLQGVRRITLKIARDGSWTANSGDTQCASGMASVQGGLVILGGSRTGPDFCMPYSLTSKDGRMKAVYETSFKARAGSAMIDLARVQDRSPAAAQVPSRP*