Scaffold Ga0075428_100158350

Overview

Basic Information

• Taxon OID: 3300006844
• Scaffold ID: Ga0075428_100158350
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2458
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001875	Metagenome / Metatranscriptome	623	Y
F009343	Metagenome / Metatranscriptome	319	Y
F073745	Metagenome / Metatranscriptome	120	Y
F077484	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075428_1001583502	F073745	GAGG	MSEPMRDPMQRQRTSGRRSIAALLPEAPRPSNESPMPGHLCEICRDAPAVACVPAPWGGEMGSCAACAGRPPDVPAAHRDVVPACLICADPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYLCGPQGAAERPEPARSDPL*
Ga0075428_1001583503	F001875	AGGAG	MTEQNQAQNLLATLRDALHQLEGALARTRDGIDEIASQADRLRAGVEALGELGQREDTSVGIEMFVDAAVDLLEAFRELESGILDVQAEVDTLEAEMADDENGREA*
Ga0075428_1001583504	F077484	AGGAG	MAHSFFHLTTLRPAPREENPLLALTPEEFEAFCAEAQPLLQALVETVNTYSEAHPELHLMACYIAADMLREMLRQDVGKAEADA*
Ga0075428_1001583506	F009343	AGGAG	MEHQRSGRLHWDTTHAATPGWLLFLDGQPGDAPTMLPGIETSLPRDASHAEIVRLIGEMLSRETGHPPQQVHITPLEEGSGYAFVATDEDPA*