Scaffold Ga0075428_100054049

Overview

Basic Information

• Taxon OID: 3300006844
• Scaffold ID: Ga0075428_100054049
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4400
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031559	Metagenome / Metatranscriptome	182	Y
F036894	Metagenome	169	Y
F065930	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075428_1000540496	F036894	N/A	MVGPMGYNARNDEIRDNITRMRREWEVQRGALATVRRFNAMLSAKGYVWFWPKIAAALTSKHHWLIIACDSCGTVVDLDLRVKPRDPELQSA*
Ga0075428_1000540497	F065930	GGAG	MRMPILSYFLVVGTVLFGGLVLVSTQLESKPLPVSQRIGVPPPFKAAPDDLPTPTWLERNQPF*
Ga0075428_1000540498	F031559	GGAGG	MSDSFINRTSRVAIAGRVAERLRPQGWNELTLRGDYHTPFGKSEARTEAAKWLCIV*