Scaffold Ga0068489_130579

Overview

Basic Information

• Taxon OID: 3300006841
• Scaffold ID: Ga0068489_130579
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1645
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051452	Metagenome	144	Y
F073653	Metagenome	120	N
F083236	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068489_1305791	F051452	N/A	MSTEEIIRNRMNRAMSSKGKTFFWNPTSKFHVKRKIKNVRLTFGGNVELTFFAPLPSKTSRLFTIEPTLDCMDSFCIAD*
Ga0068489_1305792	F083236	N/A	MVIHIGDLIRLSGKTRHGKNRIREHGDLAEVAHIDGVLNALKKFCVIHKHGDSWRWIDLPEDEHMNWEMVEKNDKCHFDNFQ*
Ga0068489_1305796	F073653	GGAG	MSEQEINQTILDTLRGAAHEFGKMSSPTAGVDTKGKSKKGKSYEGFTFGISARMDGEVKVFGKNFILINYQVGRQWENQVCRSLNEAENW