Scaffold Ga0068489_122709

Overview

Basic Information

• Taxon OID: 3300006841
• Scaffold ID: Ga0068489_122709
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2464
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F005685	Metagenome / Metatranscriptome	393	Y
F011337	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068489_1227091	F000245	N/A	SYEEVYRLDEKMKTFKEYSLQDKLDKYVSNEIKKRKLARFPVNATDDHKMKKGKPTFKFPSPTGEMMIHVWLRPMAKPAKSHTKAFNYQLEDK*
Ga0068489_1227092	F005685	GAGG	MKKFNEYTSFEDKILTTLKKGPCDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMYKEKWQLKKKK*
Ga0068489_1227094	F011337	AGG	MLRFKQYLKEIGVDPFKIVGKPAWTESLSTMLFDLPRAGLKDVMIPLSPAIMRRIWPKPVRTTVFHLTDYSGLGKLKKMQGGKRSVSAFFYIDPIVIETGIKSEGGFIAEMEADVLVASQDDISSQPDKTGRRWITLSSLMNSPTDPDPGLGGGAKLKRMENDISEMLIEIIMKYADDPQHMPNVNKSWIALGKEYGSRSKEDNKIKSQIIKDYLDGMEKVMKKHSKVLGALLTDYTKKRIQDPDPDSGDRPMWDELVVNNFKIKKVHIGPEFGPSWEDDDDIDGFPFELYQDTGDMADYITRKSQSARL*