Scaffold Ga0068489_100062

Overview

Basic Information

• Taxon OID: 3300006841
• Scaffold ID: Ga0068489_100062
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 134505
• Total Scaffold Genes: 209
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 157 (75.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010943	Metagenome	297	Y
F034603	Metagenome	174	Y
F051453	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068489_1000621	F051453	N/A	SGSVTKSVIVNLRTPAQEAEEPEHIILEDSTSFTTNFLLLDADAGSPTATGNMKFITETSSTGTGAAGIKTRLTVTPGPGDVTANDDFGYTESFEYFDDNIDTNLGTGLDVTL*
Ga0068489_100062109	F034603	AGTAG	MKSFRGYLQERAPAWTESLSTALFDLTRTHYMIPLSPSILKRIWPKLPRTTVFHLTDRVGVQHLKKMQGGKRSISAFWNITARAIDDGIRTDGGYVVELEGDILAANPDDIMSQPDKTGRRWLTLSTLLDPVDKHGMGGGVKLKRMENDIEEMMIEIIMKYADDPIHMPNVKNSWIALGKEYGSRSPEDNKIKGQIIGDYIDGMEGVMKKHSKQLKSVLLDYSKKKIQEPDEDSGDTPEWDEVVVNNFKIQRIHVTPEFSLDFEGDKDIYGFPFELYHETEEMVDYINRTVQPIKI*
Ga0068489_100062171	F010943	AGG	MTSEELHTYLMELKNKNVQSPDIVTYKETIREALDQYRTTIPRTNLMLNEQGGVNKNVVFYSFMEAPNKPAIGDHELKRMRISWRSLRKFNKDIEVRFCYDGDDVRWTELCDEFDIKMFGFSDTFKGTEPNAWCIHRWYNMSQWADEDLNLLYMDADTYCHGDIGLLFDIYKRDPVYGREELGFRHDPNLGCAGEDPRFYLDLLDASIMSQGGKTEVQKYCLGVILLNQSVHKLFTPEVMEYYTDLLERIRTFKVFYSIPNYRIMDEFAFWILMSRWSIRTSLFGDQDVSQTFLEKKHENHFNPIVLHYTTYAEEKFADWAPEFYCLSRSLEEREFADVAAGGIYNVTPLMREELAMSMW