Scaffold Ga0070754_10070202

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10070202
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034389	Metagenome	175	Y
F053259	Metagenome	141	N
F076036	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_100702023	F053259	N/A	MEKQDWINTLNQMQQANAAYSALTKNQREALTEALDALRSATQSLSDGFDLHLSDCRAIDGAFWRMHNAFEHMEPTEYQLTQLDLHGLEWDYDTQTWHEVVPSDETVDDWEPNPS*
Ga0070754_100702026	F076036	GAGG	MTTCPHVTLAVDQTRRKLIDLMDSLNEDAWQVLIEEYTHADADQLQYIENALGLFGKLIDELERAR*
Ga0070754_100702027	F034389	N/A	AKEAMENAEGCFDTAQDCIHEMCDGHEISIYYHKAIQFCADQNTSRGEEWLEDCGGISQEGDSFGTIACRIAFATLYVAAQDALCELQDEVEDAA*