Scaffold Ga0070754_10050789

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10050789
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2193
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048261	Metagenome / Metatranscriptome	148	Y
F049575	Metagenome / Metatranscriptome	146	Y
F072285	Metagenome / Metatranscriptome	121	Y
F074802	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_100507894	F074802	GGA	MTKCTCSYIQIGTKTSNTKNLNPDCPLHGTDSVWYNSPEQVKKRDERSQRLRELYDAARKAREKQK*
Ga0070754_100507895	F048261	GAG	MTEPLNHKLDVSKIKTLTDVKNVFECMSLYSNASEEHEKYELLKEYFTLPNEPQKLELPRKSLEEISQEFDEKIDDLLVKTQRKFAVSKETAEHFYNHKFNKIIENFEHAKKYGSFPLKLTLDYSKLTATGSNITSTFVIKQGNKHEGYYTFGSGYFRYYINKKPNWLVRNCAKIFFDFTWKDV*
Ga0070754_100507896	F072285	GGA	MKYPQSANKSILIREVYEDTYENPYDYIVDTMIWENLVDELHTIWHKGKDPRKVEK*
Ga0070754_100507897	F049575	AGG	MTKLSAADLMVIHNTLYKSLNVAGNSIWTQETRERVMDKVSLIMEQMNAEVVCGDVEPIVVSGDVGG*