Scaffold Ga0070754_10040519

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10040519
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2528
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032640	Metagenome	179	Y
F073494	Metagenome	120	Y
F074857	Metagenome	119	Y
F087434	Metagenome	110	N
F101078	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_100405191	F101078	GGAGG	MEMIKRTGIIKVSQEGIAQEIVMRLQGVRLNKVDSVMIPLRYKPNHYI
Ga0070754_1004051910	F032640	GAGG	MRVIDSKISTLISRGLKGEAFDRRLSKRDRVVSDGTGKVRVILWNTEIATFDAQVDEITVKSGSYQTVTTKSRINAMLYGWAKGNPSISQRKWVWYLDTLCPLTKDRKSQEFQGVASFPLKVWR*
Ga0070754_1004051911	F074857	AGGA	MTNQMNMRKTLSYREVAAQAQKLSEMAYLEACQPKELRNQVLMNHCYKQAKRLTNRLKNAGYWKNSVISLG*
Ga0070754_100405194	F073494	AGG	MVSDKVWESREISMWVNNDESLHKLARQSESSNDFFDVLEMIGVFQLGGIKITPQNVKESWEDANG*
Ga0070754_100405199	F087434	AGGAGG	MEHKGMKYLEAHKRWISQAKELIPQVPDFKPDFVKSLNERIDSGIPLTPKQFKSLKKVVWYLKKQTEGK*