Scaffold Ga0070754_10027828

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10027828
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3198
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047385	Metagenome / Metatranscriptome	150	Y
F047629	Metagenome	149	Y
F058064	Metagenome / Metatranscriptome	135	Y
F064619	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1002782811	F047385	AGG	MKTEQPTDNSLYVTIGNYVYYFDDSIEGKNIVSRWHLDDDESDIREDIQIDGELTKSIISCQ*
Ga0070754_1002782812	F064619	N/A	MSVTTILKSLDGKRDIRFCHYLQADHAHSMPRLMWKCVSHPEYQGEAMSKEHLSECFKDTLKMLHVKLNQTDD*
Ga0070754_1002782813	F047629	N/A	MTKTCPDCGLSLQGRDNESETCSDCLLEESLSNSVSKDDMSVSDKGITNQQYKEKPMNNKETILDPINMTEELMFHIFNTEFGGELDSSHRFFELYLQLQLYKEKMLKDEEDTYVSVDGESLSNEMSKGDMSVAIYNDEVGA*
Ga0070754_100278286	F058064	GGAGG	MKDKQLQSLIKYAKAQPNKSKDLPPFNPDNYQWEAKGTKWKQLLVILLSPLSCVLVWLYLAFLSSK*