Scaffold Ga0070754

Basic Information
Taxon OID	3300006810 Open in IMG/M
Scaffold ID	Ga0070754_10007545 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7109
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7109

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y
F003482	Metagenome / Metatranscriptome	484	Y
F018105	Metagenome / Metatranscriptome	237	Y
F027318	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000754510	F003482	N/A	MEDLHEKLKEMKVAKEFKDTIKDTYNLIKRDTDNIPSIDDLDDNNKGLWVEHDESNFAKMFEGLLDYCADEEEFDNLDWNTVNYKVYGPDYYEEKFPGFPDEVYDILAKSTEEENKIIDNRTPPLKIQHGEFELSFE*
Ga0070754_100075453	F001894	N/A	MPTMSEAAEIAHIHYRYQEGLNRERQDNYAKRKLKRLGYELDSANTNKDVLTAIKGDNVHINYTGTNVSNPRDLLSDVALATGVQRSNQDFTNRRKKTRDIMRQYGDDKDYSLGGHSLGGSHALNNMSQSKSIRDRVKSVHVFNPGYTLPFHNSIKTDKETKRQLNKKINIHRVKGDVVSAHANKETAFGNVFEYKADKDSDLFEKHSLDTFTDTNL*
Ga0070754_100075455	F027318	N/A	MALHQGTIKLTPQQANYIPAGKYIYVDETFSVKQPITSNEAFPRQGKALIPAYFSFKHGGQEFQQVHQPAPSLPMNYGTYIYNIVDGYQ*
Ga0070754_100075456	F018105	N/A	MSYTLDTPYSNQVIFMNSENSVFKQIDGQGEYVYSFITPIQLPTNCEMLISVTDAQFPNVIPNVTENNNKISFYIPTFSKYFTIILQEPDGTIDKVYNVSEWLSFVNAKIIIEANSQFTLYGEFQSSTSKIKWFSNFPFQIINTNSYPTSCFDLIGFAKTRSNSVSYYDEDNGVLLNSITNPSYHITMPSVINFSGTRFIFLKFKNISVSNLNSGGNTDNSIVRIDNNAPYGYFIFYRPMEVQRFVIRKQTINNISFTLTDTQGNELNIFSSDAQITLKIEFKYKPELRSMEEGTIQYELRKLAQIPKLTQSEFEGVYNPESNEFLRE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070754_10007545

Overview

Ecosystem & Geography

Associated Families

Sequences