Scaffold Ga0070754_10005611

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10005611
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8434
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F093807	Metagenome	106	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000561110	F038657	AGGAG	MNDILGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIEYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVNPKPSDEWRRAFSAWVMPSGAEHAYLWQSFSFAESKAFNNICGLFWSDKANNVGKLPVVEYKGSKHIQVGAGNSSELSFVFVKWGDRGFNVPEWYVDPDAPADDDDGFVSPNEGLADKVAEMVAKTELSDDDIPF*
Ga0070754_1000561111	F006845	GAG	MKSYKRQMDLHSYLLEEDFEEFCRESYRKIQIACEFLGIINDEDYEGFKERCYTQLETDYINSIENLTIH*
Ga0070754_1000561113	F093807	AGG	MSLRRRMTQYSDIVETQRLKLDKEKDEWYIHVNNGAGYTEIKDGDTLTITHHKTGKKEIIIDAS*
Ga0070754_1000561118	F063662	AGGAG	MEVIFNIVGGGEIRLPKREVRGYYKNPLTGDTLVQVGNDEHKVRESLTEIAYLMGVVQ*
Ga0070754_100056112	F099546	GAG	MADKKQIDISQLKRQIDKGKSLNEVSVSLGKSKSTILKIANDNGLKFENKSHWANL*
Ga0070754_100056118	F002221	N/A	MFGEFMKTYKDESLEDKLKDLRVYELETYEKWGSRKRIFKIVGVHFEIKFCKAEMLLRETLHSGHARKKMQMVDMMFRAFDSLNIKCEESGYNRIQPSTRCFNFDKKTAIICDTDDEKPVLYKVHKDEPDIMIFSIEELLRCIPKDFMKAKQILSKLDKSVNFKRIDHV*