Scaffold Ga0070754_10005420

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10005420
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8594
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020608	Metagenome / Metatranscriptome	223	Y
F029428	Metagenome / Metatranscriptome	188	Y
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000542012	F020608	GGAG	MKNKCKNPNGKSNIQTITDSKLKVVKFNSLEKVERYINELGYTLKVRNSFKEDRSVIYRHKSNKNRHVFLKSTYDFLNNNTMEMGTVWTVQQF*
Ga0070754_100054202	F102056	AGGAGG	MMNKEFEKELVKLLNKYYSTNWDYVWEFEGDTIETKLWLGEEVDDENK*
Ga0070754_1000542021	F029428	AGGA	MGRQIGNDEGSQVTFRKSIYGKSDGGKGARPRPLSVSKQKYEDNWDLIFNKKKGGNNASKEKE*