Scaffold Ga0070754

Basic Information
Taxon OID	3300006810 Open in IMG/M
Scaffold ID	Ga0070754_10004751 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9242
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (26.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

9242

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (26.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000475111	F088821	N/A	MIDTSRLYSVSKEVVEDIITKETRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIDQSSIESDDEYRERLGRMKLFPLEQKFLSAQQRIYDENNVNRLYPEGKSFWKWKESNFDDAGCSITEFYRDKVLFVKEVLGFGAIVTDLMMDVDGNPITDEDGKVVPYNYVVRPHEIWNFQMQQGMLTLLVTRQMYYDINNIKKYKWMAYTPEYICVYEETNGKKEKVLDIPNPFGEVPATLLKGQTDANSSFVVGKPRRYSLKGMYLAVSELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDKYDSKTIKEGVGMAIIIPDDQQIPSNMLYQADMQGLQHLRDVIFSDLMSMIFLLAQVRDKSVVKSNVSGSAKRFDNVEEQGLLAATAMDMESIETQVIRRMAKVRDEAYEDYMITYSKHYDLSSADEIFSDITEGMQYHALSLPLLKKLTTEYMRKRSMPQEDIEEVMEYFDEYGMPKTTSDLRNLVDILPPEELQRQAQVGI*
Ga0070754_100047515	F010211	AGGAG	MAPNKPKEISWSEALFSVIGHEPPPDSLELRNSFIENCLADQDGNKVRQAEIHMTMQKAIFDWQKQADAKKARLNGLIRAPYNTDKSQQVPIGLSAYLTTRKHELETLIVSADGGISTKRILSLRSLFDSEVYKYWCREHNFNPIELDRTDTGSTQRIIAKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVANDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNLK*
Ga0070754_100047517	F060872	GAGG	MDFLSYKLGYEMSEETDDPERKAYKHFDGYNHYPDGNLTTDDYDSNLPVWLCADFNRSPHCWALLQVKKARNGLKQYIIFDEIFSKEALTTEQAQKAVALLQKWGIWKVLLSGDNTSNQKSGNYGRVGKNDWDYVREVFDENDIAYKNELDVQNPKRKIRVDKVNNVIYAGTNGERRLLVNTRCENVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGNASPMYVLR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070754_10004751

Overview

Ecosystem & Geography

Associated Families

Sequences