Scaffold Ga0070754_10004320

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10004320
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9745
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (25.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011217	Metagenome / Metatranscriptome	293	Y
F033413	Metagenome / Metatranscriptome	177	Y
F039396	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000432012	F033413	N/A	MNNTHFTNLFSQNINLVTEFVTDFTRTFTSNVFDKYTRNDGKVYIKHSVDRNTYQDVFTVEYMIYEYKGCWVGNQKTVATFDVFADAIGCARNVQLPKDCLSEDNALTLMRN*
Ga0070754_1000432013	F039396	N/A	MMTSFYTGNSLPKFDAYHREDCEHDDYMTAEDYDRKEYYRNGWDAERYDSQRW*
Ga0070754_100043209	F011217	N/A	MNNTYLIEIDRIEPNGDVVTITERRKLSATKSNKGLDRQLNNLVNRIGEELKYYQVSYKRYTVSHVSSN*