Scaffold Ga0070754_10004151

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10004151
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10006
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F041163	Metagenome / Metatranscriptome	160	Y
F049570	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_100041512	F049570	GGA	MAITFPSIEPTSRSFIAPRWPTTSLVSQSGVKTSRLWGSRPSQALLRLTFENVTDDNAATIIAAYNSAQGSSTELTLPDVIFNGSSADLKGWLDTSSTGAGMQWFFSEEPPTVESVSPNRSTVAVQLVAELRRTIVE*
Ga0070754_100041517	F041163	AGGA	MKSRTALGRLEHIESKPKKTRQGNSKRSRPRGTRKLLRGQGR*
Ga0070754_100041518	F002317	N/A	MGSSEEVAVDVATPPNPWNQAVPALLTAAVIGLGGLFMQVAKLEQSVNTVASDIQELKNDSKERLSDLETRVRHIEMRIGRQ*