Scaffold Ga0070754_10002334

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10002334
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14081
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (80.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046646	Metagenome / Metatranscriptome	151	Y
F048637	Metagenome / Metatranscriptome	148	N
F050298	Metagenome / Metatranscriptome	145	Y
F062168	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000233422	F048637	AGGAG	MSVYMIFQRTNIDHERINNMPTSVYAKACFALGMTNKETVEDEISDGLFHGFYQPTMIMRDTQQRKRTPFEAIFDEGNGYGDETIVTTDIRKHPSMSVGDILLELSTGYAHVCMPTGWHGLDLTLELTSSIYKYN*
Ga0070754_1000233429	F050298	GGA	MTKSITKIKDLGYGWTGTLYSDGTMRIQGDLQESDCIDLPKVSVDRLAHIFREIQDDWISSHL*
Ga0070754_1000233434	F046646	AGGA	MFVCLATKPLNDNTKGFRFNFFGIKGLTRKRKRISRGFSITKGNCMTHIHIGKRTVYLEKTINKVRSRRVRHFAG*
Ga0070754_1000233439	F062168	AGGAG	MNDLKDFLKEMGLESVHPKPTVEKPDYMQPGYYVDPRNDKGEVLF*