Scaffold Ga0070754_10001533

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10001533
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18411
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (52.63%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002867	Metagenome / Metatranscriptome	524	Y
F003661	Metagenome / Metatranscriptome	474	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F009141	Metagenome / Metatranscriptome	322	Y
F017122	Metagenome / Metatranscriptome	242	Y
F019467	Metagenome / Metatranscriptome	229	Y
F022190	Metagenome / Metatranscriptome	215	Y
F043896	Metagenome / Metatranscriptome	155	Y
F055671	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000153310	F006109	AGTAG	MTRYVVMVEDRWVTAVYGPGKGIGLTASKEDASSWVTYERAVAAARAVAESFNSFACVHSVDEPAYPKSWK*
Ga0070754_1000153312	F004722	GAG	MSRARTGRELVMEWLMREIRAAKTSDLHRMAAFLEFARGVRKGSKQQRTRARLGQANSWRKAVDEDVRWRV*
Ga0070754_1000153321	F009141	AGGA	MTETAMVPFYRSYLLNGKTIYLDKISELSDSELNMLNIETLAALNEARHEYDALDNKSTEEAGPIFRKLKIAGYFQAAIKLELEQN*
Ga0070754_1000153323	F022190	AGGAGG	VTVLSIEELRFEGDHLVVDAVVDDAVVVVSQTPYNPPEWGPALCRGSMYFSEEDLIPATDAELRAMLTERVDDWAPIDTSDWDV*
Ga0070754_1000153326	F001841	GGAG	MFSPPNFFLWPVRIAAWLLWRDPVAKPQPPQPKRPRKPTLGYTVGDIPYELLAVVRVAWYRKGMADEVEEYQIEESDDASDQFRYIVGTALRQGADVCVLTSYQPEALGVPT*
Ga0070754_100015333	F002867	AGAAG	MSVVHSTDFGKGFRLEQLENERGEIYYRACNGSTCRYAEDEYIARMYLEGMGWNPIENLPLSS*
Ga0070754_1000153331	F019467	GGAGG	VSGGEWATQRERKRSRDEAREAARRLKIEWADKLWLAQNHPCDDSVLAWLSENRAEASKIGSSRWNLETLPDLHARQQQLRQAAAFQEVLDRAKISHQTLTVEQVLSEGGFPQIPQDQRQEKKTAAQPAKRSKRKDAGIARQSRKRPS*
Ga0070754_1000153337	F055671	N/A	MSNRLLTLTAVLTACGVLAMGFDNADRLRRCESAGRSVAECRLVVLGR*
Ga0070754_100015334	F003661	N/A	MDPTTVAVVAILVAAGSEVIALLPIKENAWVQLIVKALKVVFPKKLG*
Ga0070754_100015337	F003805	AGG	MRPIEHSTESQFHKAAQDKWLVELFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGLDRDSA*
Ga0070754_100015338	F043896	GGAGG	VNKTDVPEWAHHNWGRVIVDQSRADLLDKLYSWDGRDTPEHPYHHTYTGLYQKFTAV*
Ga0070754_100015339	F017122	N/A	MEVVPFQNQLDPELRLGEGRSRTSSEKAMLFELKIWLPGQGAMRDLVRAESLKQAITFATNRYPNCKVEVPETTPKKPRLVRSKNGPKESARRRLKLVEDKREQN*