Scaffold Ga0070754_10001037

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10001037
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23040
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (45.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021298	Metagenome / Metatranscriptome	219	Y
F029416	Metagenome / Metatranscriptome	188	Y
F033413	Metagenome / Metatranscriptome	177	Y
F055691	Metagenome / Metatranscriptome	138	Y
F066765	Metagenome / Metatranscriptome	126	Y
F087139	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_1000103711	F021298	N/A	MSKSVMLSLLAQGNNGNEILQILDTLIEDNQSDVAVAQPTADVIEF*
Ga0070754_1000103712	F066765	N/A	LTLKTHTLTNTLMLNFIPYAIRRPFYYVFDLIVCSDFRSEELSRIFDAYEYEQSMQILGFVNYLGITGQLDLKENFSLFADVQDLEQAINKWNEYKAQMNTSVPA*
Ga0070754_1000103716	F087139	N/A	MLLSKASFTDQQLPPFIIQKEAERTEEGSYSLHLFSRTVITKEGKKFRFLPLRFEGELARFRKRKDAEDYARYRLALD*
Ga0070754_1000103721	F029416	N/A	MSKTDMNNQELSKQIYRELFTEDQWDLIYNFIGNALDDDLFNPEDVYAIRNKIHLLFN*
Ga0070754_1000103722	F033413	N/A	MTVHYANLFAQNTDLTAEFVTDFSRTFKSSTFDTYTRNDGKVYIKHSVDRNFKNDVFSVEAMIYEYKGCWVGNQKNFGKFDVFADAIACARNVQLPQDSITQNEAFALMSN*
Ga0070754_1000103726	F055691	N/A	VGPVKCPSSMMTYTSPLTSKVYEIIETSHIRNAWDSQGNLAPYVQSAFDIYYNGQKVQFALTAEGVADSVAHLENPGPDVSSRFD*