Scaffold Ga0079220_10008513

Overview

Basic Information

• Taxon OID: 3300006806
• Scaffold ID: Ga0079220_10008513
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3868
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F013876	Metagenome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079220_100085132	F001816	N/A	LPLSPDTRKEAEKRLTVLKMIEVFADKCAKSTLLNGPFGGDDRAFDRLLGPAGILTRTSLVTATTDGRVTYYGRTEAGRVYQQVLDTELNFLDPYTGGEVWRK*
Ga0079220_100085133	F013876	AGG	VSRTMTSIDDPLLKELLAALKEDTQRMAEDLLSIITTNALVAIFALFLAVATFVRLVFYPPRFGPGPGPGLIETTLTFVLFALSVVSIYNLLRLRERYARLQALAEKLGR*