Scaffold Ga0075464_10187144

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10187144
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1227
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F027776	Metagenome	193	Y
F056414	Metagenome	137	Y
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_101871441	F056414	AGGAG	MKLTEYQRSQLKAAACFGGDQIDKVAASLQRENPEAFLRDSELHQRNFYHEPKSYGSPVPHRSYVQRLVVRRREQDNERDQVMAQNHYLAYTHQIGVGA*
Ga0075464_101871442	F027776	GGTGG	MNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGAETAQKRLDQEMDILRQELKSIQTELAYAKAN*
Ga0075464_101871443	F079788	GGAG	MDDDEIESWASIALGLIASVFFFIGVAAVIAAVCMAWGYYSYQPICGSIAAMFTQECKLP
Ga0075464_101871444	F017969	AGGAG	MISMIYIPVLFVCMNGNCEFMQAQTSYKSEQQCRASVEVQKENLQKMALKGGQMVTLIEGTCITLKGGML*