 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006805 Open in IMG/M |
| Scaffold ID | Ga0075464_10037804 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2612 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis → Candidatus Contendobacter odensis Run_B_J11 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000821 | Metagenome / Metatranscriptome | 876 | Y |
| F001477 | Metagenome / Metatranscriptome | 687 | Y |
| F014590 | Metagenome | 261 | Y |
| F083901 | Metagenome / Metatranscriptome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075464_100378042 | F014590 | GGAGG | VRTRHLSLVTSTPLDTTIVRSNVDSPFGPVRAGLTTSRITQDQQLSELLNSLESVVESLNYKSFTLYDTLNIAIEGARVALSNTVIELDGTSNE* |
| Ga0075464_100378043 | F083901 | GGAGG | MTNDVLRRLETAKRKTVRDRNYRRARDRALVRLAHLYPDTYKQLLEIEKAFDEQEGKKWIDINGNTNLSIGTHTRANGANSLGTLTGNEGANESHNGGEA* |
| Ga0075464_100378044 | F001477 | GAGG | VANLNGKGQRMSNVYSIHPKKSDLILLYEVVDENGVAEWGGNNPSHCLQWLDQAPAGARVLVSGWESDEEDAHLVGQSLDITALIVQALGRTL* |
| Ga0075464_100378046 | F000821 | GGA | MNEEYLQAKADLCEKLAAKDIQEGEIARAIKNLERANSALYRLGLVREGEADEI* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |