Scaffold Ga0075464_10035644

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10035644
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2680
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F012433	Metagenome / Metatranscriptome	280	N
F026543	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_100356442	F005584	AGGAG	MAGSIPTSYFATDLSNMIQDLYQSVTGLGSTSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGAERMIGGFSQSTDGLSFTIELAEITT*
Ga0075464_100356444	F009142	N/A	MSNSVQINVEDALEDLLVGISGLNVYKTNRVGGKLFPFATISASVGGQVLGNYTGVYEVAVTIDYSDTAAKVSQADFDAEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPQ*
Ga0075464_100356446	F012433	GAGG	MSSDQIGELRERLARIEERQTNIISILERHTSELAQWSNKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR*
Ga0075464_100356447	F006138	GAGG	MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYYNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS*
Ga0075464_100356448	F026543	N/A	MNEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEARAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILK