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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006805 Open in IMG/M |
| Scaffold ID | Ga0075464_10023514 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3216 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011208 | Metagenome | 293 | N |
| F019450 | Metagenome / Metatranscriptome | 229 | Y |
| F036596 | Metagenome / Metatranscriptome | 169 | Y |
| F078389 | Metagenome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075464_100235142 | F011208 | AGGA | MTEDEIIKAYLSRLGRKGGSVKGSCKARKLSREHYARVSKAQRERWDKFRRERQTEAQASKR* |
| Ga0075464_100235145 | F019450 | AGGAGG | MANIKHCYAVYNSIGQFQARFLTWRSALRWAIREGMEWTAVIRKEVGE* |
| Ga0075464_100235147 | F036596 | AGGA | MNKTKTWKIGEECVGGIIQAKISENVYFPSSTTVKILVKEWKTGKIIHSDIFGRIHESRLDSHLHEMTTSYYASKIMDWVKENAFTHRVLVAMEGRN* |
| Ga0075464_100235149 | F078389 | N/A | MDELGASPSAIELPTDKAKNGRPTQYDEKLGAKIIDAVRAGFTLERAAEYVGINPGTAQGWVTKRQDFGRLIKKARREHEMGLLRSVELAGEKSWQARAWILERTHGYAQPSARLNVTQDVTHGISGNLAQLLAGIAGRKKTQVINAKAIEIKPAIPIRDVTPTLEKSGKTRHRAMRRRKPRAESLAKYTTTP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |