Scaffold Ga0075464_10019853

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10019853
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3465
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005027	Metagenome / Metatranscriptome	414	Y
F034929	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_100198531	F004670	AGGA	MPKIIFDMPFDMPLFRSSDPDTSRQIKPISINSHRGILLAIYAGNISGLTDEEAAAIATSRGHTINGYWKRCADLRNQGLIHDLGVRKTLSTGSQGMVCAITRFGLDIATGCYD*
Ga0075464_100198532	F034929	N/A	MGQLLALPQNDGKPPMSQEPAHWGYTVLRSKDKLLMVQIFTDLSTGLIEYSQVCQRAQSWHSWGPPTELDKC*
Ga0075464_100198534	F005027	AGGA	METSTGELIAKLTNLSHNLALELRFKESSLVLEAVGALHALPNIAETIRHQWHPSMNDSGPSKGLSYISSAQMVDADE*