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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006805 Open in IMG/M |
| Scaffold ID | Ga0075464_10018826 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3544 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003304 | Metagenome | 494 | N |
| F011753 | Metagenome / Metatranscriptome | 287 | Y |
| F021063 | Metagenome / Metatranscriptome | 220 | N |
| F022371 | Metagenome / Metatranscriptome | 214 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075464_100188261 | F011753 | N/A | LKPYIETFRKWASENVEKTHWCERALVGPGYAGRCDAYVRLKGIGDAVIDLKNRKINKKYNTPPFYPTDAQQLWAYRNASENPKAACVSVVLASNDPEYIEHHQWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL* |
| Ga0075464_100188264 | F003304 | N/A | MKQALVTQSFGEDWQKIIDLTKPRMEAYCKRHDTDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIAADCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLSNQIKEDEAKLVGLGR* |
| Ga0075464_100188265 | F021063 | GGTGG | VRSTQLCRGDYDDRVQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKDHTGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKEKDNALPS* |
| Ga0075464_100188266 | F022371 | AGGA | MLCLVEIADIAWVIGWFVLYSSLTLSAIYCALYIIFKLIDYIKKELDL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |