Scaffold Ga0075464_10016116

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10016116
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3792
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F029418	Metagenome	188	Y
F046899	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_100161161	F012016	N/A	YAWAIEEFNSDGELVWSSIMQTRPIELSWIRDLPTKKHNIVITPLYKDETKAEKITGIKSYRESTQRMIEANGGH*
Ga0075464_1001611611	F046899	N/A	VQNAKLNNFDPSARQAIREFETWQMKVFAKNAKKGWRFFQPDTLEKPTPRSAREAWGAPYVRDEFEKKEDRNSKIMFAIVLAVLLLLSTL*
Ga0075464_100161162	F006587	GGAGG	MNSKYEGTGYVIVGFILGMLLTWAVMQSIHVQKKYKMNLKCIQGELYEEIRPNFYVKSHLECFEQRSF*
Ga0075464_100161164	F029418	GGA	MTPDEKKRKFEEDLIEVAVAEYYHWVDVHKGVRSEKDARMFYDAMRLGVIRGINFATNQYINSLKKFEESKVNGNTTDTQK*