NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10014391

Scaffold Ga0075464_10014391


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10014391 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3979
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F041644Metagenome159Y
F042880Metagenome157Y
F052570Metagenome / Metatranscriptome142N
F064681Metagenome128Y
F078660Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0075464_1001439110F042880GAGGMSNYRTVGELIEHLKGEDLNAPIIYQYYLAEHFEISEEVFGQVAGDFDSLIPCSDSYEVISREIDSKREEVNA*
Ga0075464_1001439111F052570GGAGGMRKMKYKLPKGVELEILDYDAERKNRQDSAFYTWGDTSDVALLTYQGREYRVVCVGEMRILYKGEIIRYSNDLISAGIKSDKDLGKIDDSGGEWINNSWFEVYDYGSNEYTGEVYHEVKDAIETVANWIVDEELVNV*
Ga0075464_1001439117F002827AGGAGGVNKEYYQAKADLCRDLAIKQMVEGEAGEAGKNLIRMVNALNQINLINYKEEKNNEAN*
Ga0075464_1001439118F078660AGGAGGMKLINFYEVMDHKGEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDVTALVLATITSEREKA*
Ga0075464_100143915F064681GAGGMTHTLEEYPNISSEYQDTCQECGELSACICLSSIVQEWEIEKAGEGVFAYRYQFRQYKSDLVGQFGYAESYREAMDNIAHAVKCKEESK*
Ga0075464_100143918F041644AGGAGGVSLDFILDRLTSVQVGGFWALIQVIIYALVIYLGLVIISKITDKRERGR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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