NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10007493

Scaffold Ga0075464_10007493


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10007493 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5270
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009066Metagenome323Y
F026867Metagenome196Y
F029043Metagenome189Y
F031026Metagenome183N
F048834Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0075464_1000749312F026867N/AMSSVRLNDTAMKLRKQDQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKIMPSDFDQWRLTQTGLNLPRPAGRLRSASDTTRALKSTSDSRVAWRQIENSLKAAVSSLGLPEGNGSSDV*
Ga0075464_100074932F029043N/AMSKDEQACKALQYLLDEGFISLGYIDGKPAVYLTTSLLEARKAITKLVSNDSADWWK*
Ga0075464_100074935F031026GAGMLGGRIALLLISALALCSCATTQTQDGPPPSPDSISYFIYAWDKAERTNPPCPQPYRDLFAESLKALSDSLAETQRERARQ*
Ga0075464_100074937F009066GGAGVSPEHEKHLAGILSDLVKDVDAKYRKGQDQHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAVDKK*
Ga0075464_100074939F048834AGGAGGMAIPGVDWAAALDAYVAGDREEVVPPGWFTKIDIAKLWGKTPVYTNKVLTRMMKSGGAERKVFSIRIKICNRGSKVGHCRRVPHYRLTPPKSRKS*
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