Scaffold Ga0075464_10004912

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10004912
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6300
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F029673	Metagenome	187	N
F032957	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_1000491211	F032957	AGGAG	MDDFTPTTRCFSRSLREAYPKDYVNENIIEGPFYSAPNIHDIPVLFALIAVLSMIAVAIWRYF*
Ga0075464_1000491214	F015570	GAGG	MNEELDRAFDLLEFDVTDQIRNMEYLAEQKKISTGVTDGSIQRALVRDLTENLRTLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS*
Ga0075464_1000491215	F029673	GGA	MTKQEMIQHLRMAACNENTVTGMSNAFDLGQEHERDVIASIIFNMVKDQHLAQNIVDTMRVRE*
Ga0075464_1000491218	F004231	AGGAG	MSVKPKDFQHEICVYLEGIGECLVCFDILTPEDELDADHSDDYEIDFAVFDEDDKHITYDISKKQYNHCENKAMEEMLDITTAWRKDWEGVV*