Scaffold Ga0075464_10003618

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10003618
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7174
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F011067	Metagenome / Metatranscriptome	295	Y
F030083	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_1000361810	F011067	AGGAGG	MIRQCDTGMGLCPHRPQCEHICHFTDAGLETETRKVKAYPEVPADIEPMSDTWQVIGSVMVGAVLVVLLVICLALFFTGLWVWSLLI*
Ga0075464_1000361811	F001688	GGAG	MWKYMWTELRLMLKTVTPAQAVAHELLHAEHALLQAESGVEYATALVAYNKNRVKRLKAYLGKTEEAAT*
Ga0075464_1000361813	F030083	AGGAG	MKLMHEHITGLCRQPLECWYEWEAAEPEVKEAGVVIEPAIPEQVYLVEVWVNGADIFYLISDYMKEVIELAIKEDRYK*