Scaffold Ga0075464

Basic Information
Taxon OID	3300006805 Open in IMG/M
Scaffold ID	Ga0075464_10003312 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7435
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (82.35%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7435

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (82.35%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F011753	Metagenome / Metatranscriptome	287	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y
F037193	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_100033121	F011753	N/A	LKPYIETFRKWASENVEKTHWCERALVGPGYAGRCDAYVRLKGIGDAVIDLKNRKINKKYNAAPWYPTDAQQLWAYRNASENPKCACVSVVLASNDPEYIEHHQWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL*
Ga0075464_1000331210	F004010	AGGAGG	MPLGKDVSKNMSELARDNRRKGSERGAGGKPRSRQQMIAIALSAAGKSNKSPRKFRMRSGS*
Ga0075464_1000331211	F002826	N/A	MQVEAKDRLKWAREILLIARNKLAVERNRATHGHAIDMIQIITMVDAASLVCKEVVGEE*
Ga0075464_1000331212	F037193	GGTGG	MKSKDELAMQVKKEWDEQNLRWKLWLEAGGFRTEIFCYSSAEEEYSKCVRELVDHAYQMQSV*
Ga0075464_100033124	F003304	N/A	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIANDCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLSNQIKADEAKLVELGR*
Ga0075464_100033126	F022371	AGGA	MFCLLDLAGVVWVIGWFVLYSSLTLSAIYCAGYLIFKLIEIIRKELDL*
Ga0075464_100033127	F020665	AGGA	MKKKDRKITLVKTLEQKAVRVMLDVDDDLYEALARAGRQHLAKDKMACFEYALNKALLEMLEELK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075464_10003312

Overview

Ecosystem & Geography

Associated Families

Sequences