 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006805 Open in IMG/M |
| Scaffold ID | Ga0075464_10003062 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7710 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (69.57%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003658 | Metagenome | 474 | Y |
| F020863 | Metagenome | 221 | Y |
| F029046 | Metagenome | 189 | Y |
| F046323 | Metagenome | 151 | Y |
| F059896 | Metagenome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075464_1000306211 | F020863 | AGGAG | MQTTMADLHRLVGVLEELVKPLLEGEVVEDTYESNKRPHLVLQEGSKTYGRAFRIHFTGGSKYGSGHCEPRGFSDYLGGTKAEAERTLRSLIAGIRTGLTIAGKDN* |
| Ga0075464_1000306212 | F029046 | GGA | MNLAEIDTLQDLKVWVEENMPNATVYEDMWGTLVIRTNLVSTMGGYLHKKNEDE* |
| Ga0075464_1000306217 | F046323 | GAGG | MTQQFQVVYETKGVKVVNVWLAPNQQLPEQWNTMTYAEKDEWLYEHQVHSNIKWTDEYKGEAVNVLPVAQLKAVM* |
| Ga0075464_1000306220 | F003658 | N/A | MLDLRGKPILTCICGCKMFVITVMWDDETREVSWYDLKQECKECKAISTAPTPMDWRDE* |
| Ga0075464_100030628 | F059896 | AGG | MSDKCDKCENMARVTVSGFIVAQYLCAQHAGELCLSVGDLAGHSKFLALTEGDKVSA* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |