Scaffold Ga0075464_10001862

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10001862
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9561
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011388	Metagenome	291	Y
F026257	Metagenome	198	Y
F048282	Metagenome / Metatranscriptome	148	N
F096925	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_1000186214	F048282	AGGGGG	MPTAVTEYVNRCARLMGLGHWELTVSKEAASEDAWADIEVSQNLYKATIRFSPDIWKEKATEIRRVVAHELIHCHYAGVERLVDTLEKPLGSAAFEILSHVWDVESERGADSLSTVVAQLLPLPTFGEK*
Ga0075464_100018622	F011388	GAGG	LKQLTNDVAIDLARGREDIEFFALRWLGIQGNPGQVAWWKACSERDATGYRPRYITTVVSAGNRAGKTLAMAVVCLHHALYKLGLANPQAGDPDSYRKWLDTPYEWYHVGIQQETAELVFREIETILSGAHPAQRGRGCAIIKELGKVVDTQKKYRGEYAWVKFNPMVGGASIHFRTTQDRAKALLGKDMNGVSFDEAAFEPHLVMIYQEVLNLRRLSTGGPLHFIGTPSEGINDYAELWERGNPENPAKDEKFISFRLSTRDNIGYGLTQDNFDDVVRQQAAYLIPQNIDGFFIESRDAFFWSQSVLASYKVLEDDLKPTKSHRYVQGVDPGISHDATWAITLDITERGKLRGVRVRKRGGKQSISAVVNMVREGHLLYSQDGAFCTTIVDSTGLGGRLFQQEFSMIRPLRGFDFGGTKSKKVELLNDLKAVIDKGQIEFPMGGPWDELKRQLLIYKLDDKKLEQDAVMALAIAVRHALRNPEKGLENPTFTYYGASD*
Ga0075464_100018628	F096925	AGGAG	MQLKVRSQLDHVEAGGVLDDCGPSSAACASSWVLGKEITAGEGIAAKEKATGFKEKQGVSDNGSSLWDLIKTCKVLGANARYPRDWDDCVESLKKGAALIINVDAAKNYPPQAISAWHKRYIGRHAGATYGHMTAAAWSEEQGFQFADPTFTGKGKEKFAVTVTDKELKAIASSKGDAPFKRCIIVKK*
Ga0075464_100018629	F026257	N/A	MTELAPVLTGCHVCRSPLVETINKKMRDQVPDQRISEWLEENAQYISRITLGKHKREHLTEPHERLRQQAVKVMQKQQKTIKGSGDLAGLVRDYVHSAVEEGLMTPTLAEGLRAQEMIDRRQEKGADREIALTLAGILGGVATYQLLEATEIKETPDAIEG*