Scaffold Ga0075464_10001612

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10001612
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10171
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F012113	Metagenome / Metatranscriptome	283	Y
F023059	Metagenome	211	Y
F074559	Metagenome	119	N
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_100016121	F093506	AGGA	MATTIISNISSFDYEPDILTDNGRDGITSFQFSIVGGFSALNSNFSLGQDISGVPDQPPGNFKVVRRNMSHIAGDVSNGLYRVQITGEGGTGDNSLYILETSFQYQREIASGLLTIGAETANFQQSTVQYTLEWLSPTVTITTNSQQEDVGAVQDRVRELALLVPPQIIRNKPESAPAGPGSPSRNISGPGIDVDRVYVVGSSVENAGGLFRVRASAARGSAEIVI*
Ga0075464_1000161210	F074559	AGG	MKAQNPWQKLLQEHIKDKFAPPPPAGYHTREEVSKLWQKSMNTTSRMLSQMLLEKKVDMKRHPFIIPRKDHRVVRNLKIYKILPTKHPHK*
Ga0075464_1000161212	F005846	N/A	MTSFPLPARPQASAVPAWHIEFKKDTAIEGKANGWRGLFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWQKQRIRW*
Ga0075464_1000161213	F005702	GAGG	VIFGLIIFIGLFILQGLRIFAKHIDQQNYERRQFYLYVAAELDKMDKIVAEGNQPKEPELVLPSKNWVGRN*
Ga0075464_100016125	F012113	N/A	MNNLIQFVTTQDWVAWVGAATALLTAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*
Ga0075464_100016126	F023059	AGTAG	MFEAAIASLAGVVGIVFWWLKNRAKTRRERDDEEIAYNRRLRDAEVDSWIHRR*