Scaffold Ga0075464_10001219

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10001219
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11613
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015591	Metagenome / Metatranscriptome	253	N
F021520	Metagenome / Metatranscriptome	218	N
F026250	Metagenome / Metatranscriptome	198	Y
F036672	Metagenome / Metatranscriptome	169	N
F041731	Metagenome	159	N
F067688	Metagenome	125	N
F103159	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_1000121913	F026250	AGGAGG	MTNRQKQLAVAIGMAIMWGFWLLPTAEELPDAQPATPLEWKLFIALNFASILYLHILNVREHHRQLRREANERYWERMETRSRRNHPTNRDYQ*
Ga0075464_1000121919	F041731	GAGG	MNAIEGRDLDLPGDEQAVTYIRERLNSIQGADRARMAMLITQAEIAGRSISLKETKSLRRFEIARGLFLLFDSGQFDEDLVKDICSQITMQKYSKPGEALACLDVKQAQRFANACHGIARDLLNLIYIPETNTFHIEEKAS*
Ga0075464_100012192	F036672	AGGA	MKFWGEFHALIWTIAASITTILTLSGGLQKIVIWLTIAALVLHFIGALTNKENN*
Ga0075464_1000121928	F015591	N/A	MNNYEDPIAEFIEASAEGLCTGYVVIANIERINGDQSFWVTTLRNQTASTSLGLLESASAAEKYRIARSFNRLDDD
Ga0075464_100012195	F067688	GGAG	VDWGVVVAALVTAVGGIITTLLLKVRKENTNDHATVMEILRTVGGNVERIDSKLDSHIDWHLKEATRGEIPKRN*
Ga0075464_100012196	F103159	AGGAGG	VGKFLNEIKGQPVGCSNTIDAIIAKLGEHDGKDLLDALNDPSIRAIQIIKALQARQIKLSASVITRYRAANVITQ*
Ga0075464_100012198	F021520	GAGG	MSQDEMRTMVVVIWHDAHAATDSWTPIDEIPNDPCVVVSAGFLLATSDGGKEGHITIFQSKTDSDDVDGVLCIPAEMVQSMRVMTKNIPGLAPETLINKGSKKS*