Scaffold Ga0075464_10000264

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10000264
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22769
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.51%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022372	Metagenome / Metatranscriptome	214	Y
F047567	Metagenome / Metatranscriptome	149	N
F075844	Metagenome	118	N
F078391	Metagenome	116	N
F095140	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_1000026418	F022372	N/A	MVLHGKQLPQPNPFMSTTTITIDVAFLTEEQRNAATLLFARSGGWQSFVDGEPNPITAEDYGVTMIAQYLRQRVSEQSAYDAQIAAAQAVADLLDGVTVTTPAEFDALFPTPPIVTPV*
Ga0075464_1000026419	F078391	N/A	MNDLLPAMGRFFANEWDGFYQRVGVNVSVTTLGILTPLVHAELNMWLQTTMYVSGLIVLIWNFWGAQKELKRKRMRDEEAAAEWMRVAQAESKFPKQKTKDL*
Ga0075464_1000026420	F095140	N/A	MNTKNLAGYGSIATSTLTALSGAPYALGDVATIIPPAWKAKLFVVSAIATMILRLIRDHQGDSPSK*
Ga0075464_1000026428	F047567	N/A	MISLEKIHSTKREAVAMLAEIVERIHETEWMRETVERVGLDPLELYEVVKAGSKWKIKATAAHLEATQQLHQINNRRNL*
Ga0075464_100002648	F075844	N/A	MPSVTLIGTAGAAYALPAEELFVDAESVSLDISPQFIKEKNNALGIVNGVAYGPMELSLSISGKTRVKSVTAPYTGSCLLSVLGTAFVPQTTYTTLSAGTPITAIFGAPTTGLYLEKASLTYGEGHFVSFTADYKARGGIT*