Scaffold Ga0075464_10000229

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10000229
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24130
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (20.45%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F028175	Metagenome / Metatranscriptome	192	Y
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y
F049635	Metagenome / Metatranscriptome	146	N
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_1000022916	F049635	N/A	MNKAIYKTPFGRLVKINFKTLTNFKTALRISDPTARLYVMHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*
Ga0075464_1000022919	F045753	N/A	MYCPKITYCFSDDDIRTLNERIKAIANNYNDDQTGWFEVDQEQHLVFIDDLDNMYNINLRGRFFRNDEPEFDLDFVTLEKDGISFSFDVNIFDDHI*
Ga0075464_1000022922	F041777	N/A	MKKTLLFIALLFGAMLIAGTIDEQTRQLEQQPNHYTK*
Ga0075464_1000022924	F023350	N/A	VTLDKYIEGHYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK*
Ga0075464_100002293	F021113	N/A	MDKREYQPDALVVVIATSVFWLLVYFAFSNLKPKIETQVELKKQDSIINYNEGEYQMLLEETIELKEQLSYYENAQHSTKTTYRTRRDTILRVDTIRKIDVIYLVNACDSVIASDSLVINNLTEQLNIEERKINNLQEVVVAYEQKEQLLTEEINTLNVDKKQLDKQKRRRNRALVVTSSVAILSTFVLSILL*
Ga0075464_1000022938	F028175	N/A	MAITIDDQPYQYTPVGQRLMLVASSTNVANAGFRFVFDFGSFQVNVQPNASSKGILDLAPIFRESLQHDASLLTSTNTTETSSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVFAFLAEYQVSDGYKPDPNGRYALSGANRYVLSERTYNTHKWIEASARGLSNDWVYIPTRLADYGIMYTPSATALLASNDFDIAVFSTYDNNNALIDTVKVELSDENNIVNVIGANPMNLISGGLDFTNVKYYTIQIGKVIEFPIYTPSSNVYCFYIIPDDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGTYNESTFGFNTFDRGATDRYVTTTKGLQINSDWVSIGEFNLLQTLCRSNDVYIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL*
Ga0075464_100002294	F082704	N/A	MPESKTKKGICVYLHKDLWNEIDEKRGENSRNAFLSEAIEFSLKFYVEESKVKLKEQTSTK*
Ga0075464_100002295	F019140	N/A	MKPTPLYEALKITQEREREIINSVAVYFQQGKVLGDVLLELSQRKDMNAKEKIYCSLMIGSMMTKNNEDAREQN*
Ga0075464_100002298	F012871	GGA	MLRNASTTTLTTTQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQILHEFIGKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKVNLQIQREIAESKEEESKQLKEKEMAVNDDSWRRMLAEDLHNYKQGKYTVIEIRAVSLMRWLEESKQITVDTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ*