Scaffold Ga0075464_10000092

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10000092
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35281
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002343	Metagenome / Metatranscriptome	568	Y
F015721	Metagenome	252	N
F042306	Metagenome	158	Y
F064514	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_100000924	F064514	GGAGG	MRTPYQSFNAPATMNGGRGQRLARMLQMQGQSQQISNNAGAQTDMQYNPPQNAADMNPAPRQFARMYPRKPKTPGMVNPQGGPDRGSFENG*
Ga0075464_1000009243	F015721	GGAG	MNPSDFESRFRASRPAEIVVATYLLNIGHTVTLPKRRMAKDFADRAEYADKGDIYASGKRIEVKHVKHDFDYQAWPFEYAAICAKKSFDAADPRPDYYYIVNKSMTVAALVDVATTRPEWLIRRLPDRQRGYDYDVYALMPEYLGWRYLNFEEKL*
Ga0075464_1000009250	F042306	GGA	MAKKDRYKAVQINDGTWYRIKGYTHAECCDCALVHKEQYRLVDGHLEWMAERDDEATKARRKELGIKVTRNAKIHKR*
Ga0075464_1000009255	F002343	GGAG	MSDAKLEMSLEEAVAVVNLLGSLPTSQGAHPLWQKLKAQVEAQLPPTEETKQ*