Scaffold Ga0079221

Basic Information
Taxon OID	3300006804 Open in IMG/M
Scaffold ID	Ga0079221_10038803 Open in IMG/M
Source Dataset Name	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006804 Open in IMG/M

Scaffold ID

Ga0079221_10038803 Open in IMG/M

Source Dataset Name

Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2069
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2069

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.8834	Long. (^o)	-83.4195	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.8834

Long. (^o)

-83.4195

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F006575	Metagenome / Metatranscriptome	370	Y
F029856	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079221_100388031	F029856	N/A	TAERALRRAGIGFFGLRAVLRVLSPAESDALLGVAAAASLDDDRALYRDTEWPAEQVEKFKPYSTASLIAFATEGFLSTHD*
Ga0079221_100388032	F006575	GAG	MTDAASPYLALRQAVRPAILACRLLAGDQERAGKLATECEDLLFLTSELLKAAGRARLLGPAPGTGSMVPNDDGGERHAQLVDAYADAGLLWAKVVGSCLALAGALIEREDWDDVRALASFLASSGEQTAAAELRLVLGNAIWQRHSEQLRVISNTMPPAAIGGAISALRAVLREVPEEYPDRNREVNRLLPPLAAAVGALMREQQVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGLCRRPGRDTT*
Ga0079221_100388033	F001698	AGGAG	MSGVVNDIEALAEFRSHLMRFNHDLAENFSTIQSHWRELGEVWRDDMYRLFGEALEEVLPGITAYLEATEGHEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGTGAANGTGRRDRNPR*
Ga0079221_100388034	F002850	GGA	VTGIHADIDALKGLHGALARYRHAQRDVTARGEDQVRATRASLEEKASQLRAQLELCQGEYAGCRERAAQAGPEDLPVDCSGYARAVAQATERIEQIQRWRQRIDAEAGEFSGVAGRFAAMLADDLPRMEEHLAAMIASLEAARRVQAP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079221_10038803

Overview

Ecosystem & Geography

Associated Families

Sequences