Basic Information | |
---|---|
Taxon OID | 3300006803 Open in IMG/M |
Scaffold ID | Ga0075467_10350468 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 776 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010900 | Metagenome | 297 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0075467_103504682 | F010900 | AGAAGG | MTTESFTERAQALIDSCYEYETTHQDAGDNYAHLSSEGNFDYYNGESRLQDYCDEMGIDLTGIDIDRLAGDVIFWGYMVQGIAYDARKRFLVASYNVGEIESQVDSSDIGARFTPYLIDQLNKRTDAYWRYSTRDTAYFYINASESYWDHVCDADVIRDLVEQHKEN* |
⦗Top⦘ |