Basic Information | |
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Taxon OID | 3300006803 Open in IMG/M |
Scaffold ID | Ga0075467_10028581 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3560 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F063717 | Metagenome / Metatranscriptome | 129 | N |
F074761 | Metagenome / Metatranscriptome | 119 | N |
F097381 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0075467_100285812 | F097381 | AGGA | MQYGNSKDMFKEIGIVESRLFSVRSAMNELHSTFCHMDRGQRLILKEWFDSFDSITDAINAAAEHEQGNFADL* |
Ga0075467_100285813 | F063717 | AGG | MNIKSLVKEIAKLEKSADVVKLKMLKRALAAEKKAPADAVKNSIGVNENGFTRFKHKPSNLIVTSRDAGKIIGSINWEGQRWDWGLTVRTPSPEIQKVLTINPFI* |
Ga0075467_100285815 | F074761 | GGAG | MKYQFQGKEYPTIKAMVLAVNPIINAWPDEMIERFYVNNVLPFDRRSITEIMNDDN* |
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