Scaffold Ga0070749_10257224

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10257224
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 987
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F005611	Metagenome	395	Y
F033955	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_102572241	F005373	N/A	TNKREDNMNEGLENIKQIEDLENKVKTLSDHLAGMCCQADEDTPSEYRTEHFRSTMDDAYEYLEKIGYFKK*
Ga0070749_102572242	F033955	AGGA	MKIVRIDLQGACEPMEFESKKALREYLIDFHLQDYHEEDEFGVEDIKLIKSFSLDQICDYFDWGYEQARKQ*
Ga0070749_102572244	F005611	GAGG	MKSKKYKVRAEETIYAIYETEIEAKNKKEAEKIALDTCASDYKSSDWSNSAGDFTIEDIEEIE*