Scaffold Ga0070749_10143080

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10143080
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1394
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003825	Metagenome / Metatranscriptome	466	Y
F016660	Metagenome	245	Y
F028115	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_101430801	F028115	N/A	EKKLQERRYGAPGSKSAAVEDALRASFAVENKQDDPQTWSVAEVVDQIGASTPNEPPSCEHGHILKQGISKTGKPYYGYVCKGKITEHAKWAKLTANGKWYFEGVE*
Ga0070749_101430802	F003825	AGGGGG	MGYIAFINGKGIQVVMDDDGVHLEQSVIKCEVCDDDRVFKDGTCFKCHELINYDKPSEL*
Ga0070749_101430803	F016660	GAG	LWLDAIDMPDGFKVYQCMDCGCVGVKNVVEALSIPDSDISRCDKCGSWQFKEMPCHTCNLIGAK*