Scaffold Ga0070749_10041883

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10041883
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2814
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → unclassified Acidithiobacillales → Acidithiobacillales bacterium SM23_46 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012662	Metagenome / Metatranscriptome	278	N
F054687	Metagenome / Metatranscriptome	139	Y
F071183	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100418831	F012662	GAG	MNNRELLLQPADMIEELMYHILWNEFDGELNPDHKYFPLYLSLQQLLEDETRRLEQ*
Ga0070749_100418834	F054687	N/A	MNDNLTDPSKLETLDDISIQTLIDHYLSVKERLPDNLRVRDRLVELQQELLSRQPSTIEGMIRQTTDNPINQ*
Ga0070749_100418837	F071183	N/A	MKYTINETLKNEYKLTNDGDAWGNCMQWLFAICDYLTFETDECIPDEWQFKASPLGADDESYVFQSLKELSLPAREILEFGKVLIRLRDILEHKGLSY*