Scaffold Ga0070749_10037504

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10037504
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2992
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013880	Metagenome	267	N
F016522	Metagenome	246	N
F034164	Metagenome	175	Y
F095405	Metagenome	105	N
F099216	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100375042	F095405	AGGAGG	MGGNCQDVGFPVCPQCRCGLLGSADAEIDEWGTVIHCEECGFGSMVYAKPGGSYSSFCFAGHSWHMLNGCKVCSLCGVEDEGGL*
Ga0070749_100375044	F099216	AGAAGG	MRVHNMEVGQSVEMPDTTVKQARRGTSWARCKAKSCRRFAVTEAGSGVIIERLPDRELVLDAIRNGGEQVFVRQCVETARQAIRRAIRAGELSGCWHVEPSGSGSMLQRMNTQAEVDKAAAEYRRWKRTRY*
Ga0070749_100375045	F016522	GGA	MVYKLDAVGRRRWLVGQLTADDMSEEITRKPIGRHGWSPSQRDAQRFASHPEARAAADAVEHAARVVGLCHVMEVA*
Ga0070749_100375046	F013880	GGAGG	VGRFIPQSEHRDSLTRLYDTMEVGDEARVLRDRPTAYKLLRSAWYRRGRREKIASGQDVPWLLLEEAVARVNGEVVEATMVVRVANRKECWETRKKFLKEGVT*
Ga0070749_100375048	F034164	AGGGGG	MSRRADPTPEEIAAEAAKIRAEWPEYRWAKELPEEPPVQVSVVKLDKRWNGVLM*