Scaffold Ga0070749_10033543

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10033543
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3186
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027828	Metagenome / Metatranscriptome	193	Y
F082582	Metagenome / Metatranscriptome	113	Y
F084145	Metagenome / Metatranscriptome	112	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100335431	F027828	N/A	TLLDKVLMVEELLNEKQLNALRDILYFYKEFENEKYNYPPEDTLFTQTQRELFDIFDIQ*
Ga0070749_1003354310	F084145	N/A	MFITCPASFDLIDAEWFDDLYDAKEDALNWSCDLDGEKVIVYEAQEDEDGSYDFKKLCAIYA*
Ga0070749_100335434	F101038	N/A	MQLTNSFPPVDALVEFSNKKLKEFDYVKFGDNVIQFAATVYAVVVGVFSYVWTALQLWWDDNGETVQVNTIRIVVNLIDFIAAIVIATPKVYRWVKLNSNRLVDSLYFQYTFA*
Ga0070749_100335438	F082582	AGG	MLGMLRNGATGTQILDILNVIVPKQTELTREQVCEDMGIADCPENDDEIARYMAAV*