Scaffold Ga0070749_10024104

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10024104
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3834
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F021097	Metagenome	220	Y
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100241041	F091979	N/A	IAGRFAIGNSPFLQGWQQEYMKAHGSMPPQDKVMDFLTSVVRNESIPMQNKQAELRLLDQMQRFAPDIRNVVR*
Ga0070749_1002410410	F021097	AGG	MQRNEFADACIAMTLGIGAGMLLSVFGQKLLNQYYRNTCHNHPGHNLIYTKGFLGDTYYCINAKYVN*
Ga0070749_1002410411	F015587	N/A	MTALNIRKNTAQLLLATAAAVENAKMPTKAGMVEKLNEYRTRAAALIMPNDMAFVITPKQGN*
Ga0070749_100241042	F019817	N/A	MLSQEQIKLPTLTINQRNIYMYFLNHRKKYKTAPCFVPKCPTQNGIQIYLNALIKLEQYGLMRVDRNSDNYTGWIMLEPKAN*